SRX149201
GSM936199: endogenous Ikaros, rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ikzf1

Cell type

Cell type Class
Blood
Cell type
B3
NA
NA

Attributes by original data submitter

Sample

source_name
ChIP-Seq data from Wildtype B3 Cells using Rabbit anti-C-terminal Ikaros antibody
cell line
pre-B cell line B3
cell line reference
Brown et al. 1997
chip antibody
Rabbit anti-C-terminal Ikaros

Sequenced DNA Library

library_name
GSM936199: endogenous Ikaros, rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4058660
Reads aligned (%)
94.6
Duplicates removed (%)
17.6
Number of peaks
644 (qval < 1E-05)

mm9

Number of total reads
4058660
Reads aligned (%)
94.3
Duplicates removed (%)
18.2
Number of peaks
678 (qval < 1E-05)

Base call quality data from DBCLS SRA