SRX149179
GSM936104: e11.5PGC-H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
Embryonic gonad
NA
NA

Attributes by original data submitter

Sample

source_name
FACS-purified Pou5f1-GFP-positive germ cells
tissue
Embryonic day 11.5 gonad
strain
(CBA/CaJ X C57BL/6J)F16+ X Hsd:ICR(CD-1)
ChIP
H3K4me3 (04-745, Millipore)

Sequenced DNA Library

library_name
GSM936104: e11.5PGC-H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28800669
Reads aligned (%)
23.8
Duplicates removed (%)
33.7
Number of peaks
7862 (qval < 1E-05)

mm9

Number of total reads
28800669
Reads aligned (%)
23.8
Duplicates removed (%)
33.9
Number of peaks
7861 (qval < 1E-05)

Base call quality data from DBCLS SRA