SRX149175
GSM936100: Replicate-2-e13.5PGC-H3K27me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryo
Cell type
Embryonic testis
NA
NA

Attributes by original data submitter

Sample

source_name
FACS-purified Pou5f1-GFP-positive germ cells
tissue
Embryonic day 13.5 male-gonad
strain
(CBA/CaJ X C57BL/6J)F16+ X Hsd:ICR(CD-1)
ChIP
H3K27me3 (07-449, Millipore)

Sequenced DNA Library

library_name
GSM936100: Replicate-2-e13.5PGC-H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
72519743
Reads aligned (%)
84.5
Duplicates removed (%)
32.2
Number of peaks
66803 (qval < 1E-05)

mm9

Number of total reads
72519743
Reads aligned (%)
84.5
Duplicates removed (%)
32.2
Number of peaks
67033 (qval < 1E-05)

Base call quality data from DBCLS SRA