SRX148835
GSM932963: H3K9ac ChIP-seq mature B [8086]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mature B
genotype
WT
extraction method
Ex vivo
tissue
Lymph Nodes
strain
C57BL/6
antibody
H3K9ac Ab (Upstate 07-352, LOT# DAM1394804)

Sequenced DNA Library

library_name
GSM932963: H3K9ac ChIP-seq mature B [8086]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6347683
Reads aligned (%)
84.5
Duplicates removed (%)
4.7
Number of peaks
3268 (qval < 1E-05)

mm9

Number of total reads
6347683
Reads aligned (%)
84.4
Duplicates removed (%)
5.1
Number of peaks
3294 (qval < 1E-05)

Base call quality data from DBCLS SRA