SRX148809
GSM932937: H3K4me2 ChIP-seq pro-B [8109], 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype
Rag2(-/-)
extraction method
4-5 day culture
tissue
Bone Marrow
strain
C57BL/6
antibody
H3K4me2 Ab (Upstate 07-030, Lot# DAM1474881)

Sequenced DNA Library

library_name
GSM932937: H3K4me2 ChIP-seq pro-B [8109], 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5497027
Reads aligned (%)
94.4
Duplicates removed (%)
2.8
Number of peaks
18232 (qval < 1E-05)

mm9

Number of total reads
5497027
Reads aligned (%)
94.3
Duplicates removed (%)
3.0
Number of peaks
18191 (qval < 1E-05)

Base call quality data from DBCLS SRA