SRX1487622
hIP-seq H3K9, human maternal chr15 with a targeted deletion in the mouse F12 cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

isolate
15Md_K9
age
missing
biomaterial_provider
Dr. Horike Lab., Kanazawa Univ.
sex
missing
tissue
missing

Sequenced DNA Library

library_name
S14
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
106797543
Reads aligned (%)
2.0
Duplicates removed (%)
60.1
Number of peaks
10790 (qval < 1E-05)

hg19

Number of total reads
106797543
Reads aligned (%)
1.9
Duplicates removed (%)
63.3
Number of peaks
10898 (qval < 1E-05)

Base call quality data from DBCLS SRA