SRX1487596
ChIP-seq H3K9, human paternal chr15 with a targeted deletion in the mouse F12 cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

isolate
15Pd_K9
age
missing
biomaterial_provider
Dr. Horike Lab., Kanazawa Univ.
sex
missing
tissue
missing

Sequenced DNA Library

library_name
S06
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
127839371
Reads aligned (%)
2.8
Duplicates removed (%)
58.7
Number of peaks
17253 (qval < 1E-05)

hg19

Number of total reads
127839371
Reads aligned (%)
2.5
Duplicates removed (%)
63.4
Number of peaks
17598 (qval < 1E-05)

Base call quality data from DBCLS SRA