SRX148691
GSM933094: Control H3K4me3 ChIPseq; Rattus norvegicus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Cardiovascular
Cell type
Vascular smooth muscle cells
NA
NA

Attributes by original data submitter

Sample

source_name
vascular smooth muscle cells, H3K4me3 ChIP
strain
Sprague-Dawley
cell type
cultured primary vascular smooth muscle cells (VSMCs)
treatment
none
chip antibody
H3K4me3
antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM933094: Control_H3K4me3_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

rn6

Number of total reads
44516649
Reads aligned (%)
80.3
Duplicates removed (%)
43.0
Number of peaks
25840 (qval < 1E-05)

Base call quality data from DBCLS SRA