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For ce11
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For ce10
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9me3
wikigenes
PDBj
CellType: Adult
ATCC
MeSH
RIKEN BRC
SRX148637
GSM932875: H3K9me3 chip-IP from nrde-3(gg066) mutant C. elegans that underwent smg-1 RNAi; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9me3
Cell type
Cell type Class
Adult
Cell type
Adult
NA
NA
Attributes by original data submitter
Sample
source_name
adult C. elegans
strain
YY158, nrde-3(gg066)
developmental stage
adult
RNAi target
chrI:6,907,993-6,909,159 (smg-1)
antibody
H3K9me3
antibody manufacturer
Abcam
Sequenced DNA Library
library_name
GSM932875: H3K9me3 chip-IP from nrde-3(gg066) mutant C. elegans that underwent smg-1 RNAi
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
15301248
Reads aligned (%)
94.4
Duplicates removed (%)
53.1
Number of peaks
3662 (qval < 1E-05)
ce10
Number of total reads
15301248
Reads aligned (%)
94.4
Duplicates removed (%)
53.1
Number of peaks
3663 (qval < 1E-05)
Base call quality data from
DBCLS SRA