Curated Sample Data


Genome
mm9
Antigen Class
TFs and others
Antigen
Med12
Cell type Class
Blood
Cell type
HPC-7

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
HPC7
cell line
hematopoietic cell line HPC7
chip antibody
Med12 (bethyl-A300-774A, lot 1)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested, washed with PBS and crosslinked with 1% Formaldehyde for 30 min at 37C. Libraries were constructed with KAPA Hyper Prep Kit and Multiplexed with NextFlex Barcodes from Biooscientific

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
41111453
Reads aligned (%)
92.6
Duplicates removed (%)
64.8
Number of peaks
3082 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA