SRX148009
GSM697626: ChIP-Seq for SetDB1 in Wm451-lu melanoma cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETDB1

Cell type

Cell type Class
Epidermis
Cell type
WM451
NA
NA

Attributes by original data submitter

Sample

source_name
Melanomas
chip antibody
SetDB1
antibody catalog number
SC-66884
antibody vendor
Santa Cruz
antibody lot number
A2809
cell type
Wm451-lu

Sequenced DNA Library

library_name
GSM697626: ChIP-Seq for SetDB1 in Wm451-lu melanoma cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9273864
Reads aligned (%)
82.2
Duplicates removed (%)
51.7
Number of peaks
660 (qval < 1E-05)

hg19

Number of total reads
9273864
Reads aligned (%)
81.6
Duplicates removed (%)
52.6
Number of peaks
655 (qval < 1E-05)

Base call quality data from DBCLS SRA