SRX147764
GSM930144: Ring1B shFbxl10; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rnf2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
chip antibody
Ring1B (custom-made)
cell type
embryonic stem cells
transfection/genotype
shFbxl10

Sequenced DNA Library

library_name
GSM930144: Ring1B_shFbxl10
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
61437724
Reads aligned (%)
89.5
Duplicates removed (%)
65.8
Number of peaks
661 (qval < 1E-05)

mm9

Number of total reads
61437724
Reads aligned (%)
89.4
Duplicates removed (%)
65.9
Number of peaks
731 (qval < 1E-05)

Base call quality data from DBCLS SRA