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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: CHRF-288-11
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX147735
GSM929901: FAIRE CHRF 1 2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Blood
Cell type
CHRF-288-11
NA
NA
Attributes by original data submitter
Sample
source_name
Cell culture
cell type
CHRF-288-11
individual/replicate
Repl-1 + Repl-2
f-seq parameter
8
Sequenced DNA Library
library_name
GSM929901: FAIRE_CHRF_1_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39518451
Reads aligned (%)
98.7
Duplicates removed (%)
13.1
Number of peaks
15987 (qval < 1E-05)
hg19
Number of total reads
39518451
Reads aligned (%)
97.9
Duplicates removed (%)
13.1
Number of peaks
15641 (qval < 1E-05)
Base call quality data from
DBCLS SRA