Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
cell type
human breast cancer
chip antibody
ERalpha, Abcam #ab32063

Sequenced DNA Library

library_name
GSM6030603
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with 1% formaldehyde for 20 minutes. After quenching and cell lysis, chromatin was sonicated using a E220 focused-ultrasonicator (Covaris). ChIP-seq libraries were prepared using the TruSeq ChIP Library Preparation Kit. 10 ng of DNA was used as starting material for input and ip samples.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
12816001
Reads aligned (%)
0.0
Duplicates removed (%)
0.0
Number of peaks
0 (qval < 1E-05)

hg19

Number of total reads
12816001
Reads aligned (%)
0.0
Duplicates removed (%)
0.0
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA