Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EPAS1

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3 Prostate cancer cell line
cell line
PC3
ambient o2 concentration
0.50%
duration of hypoxia
16 hours
chip antibody
HIF-2a (rabbit polyclonal, PM9)

Sequenced DNA Library

library_name
GSM6022003
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) experiments were performed using antibodies directed against HIF-1a (rabbit polyclonal, PM14), HIF-2a (rabbit polyclonal, PM9), or HIF-1b (rabbit polyclonal, Novus Biologicals, NB100-110). Automated library preparation was performed using the Apollo prep system (Takara, PrepX Comp ILMN 32i DNA Lib 96).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
26704447
Reads aligned (%)
97.5
Duplicates removed (%)
14.9
Number of peaks
743 (qval < 1E-05)

hg19

Number of total reads
26704447
Reads aligned (%)
96.7
Duplicates removed (%)
15.2
Number of peaks
475 (qval < 1E-05)

Base call quality data from DBCLS SRA