Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
WT_BM-derived MSPCs
strain background
C57BL/6
genotype/variation
Wild type
cell type
BM-derived Mesenchymal stem/progenitor cells (MSPCs)
cell type
BM-derived MSPCs
passages
5-10
chip antibody
H3K27me3 (Millipore 07-449)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
MSPCs were fixed with 1% formaldehyde, lysates were sonicated and the DNA was sheared to an average length of 300 to 500 bp. Histone-DNA complexes were isolated with specific histone modification antibodies. Illumina sequencing libraries were prepared from the ChIP and Input DNAs by the standard consecutive enzymatic steps of end-polishing, dA-addition, and adaptor ligation. After a final PCR amplification step, the resulting DNA libraries were quantified and sequenced.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
36508446
Reads aligned (%)
62.8
Duplicates removed (%)
12.2
Number of peaks
3569 (qval < 1E-05)

mm9

Number of total reads
36508446
Reads aligned (%)
62.7
Duplicates removed (%)
12.2
Number of peaks
3546 (qval < 1E-05)

Base call quality data from DBCLS SRA