SRX146541
GSM928467: V65 KO H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse V6.5 ESCs, Utx-/Y
chip antibody
H3K4me3; ChIP grade, ab8580, abcam
strain
V6.5
doxycycline induction
none
genotype/variation
KO Utx-/Y

Sequenced DNA Library

library_name
GSM928467: V65_KO_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6939853
Reads aligned (%)
81.0
Duplicates removed (%)
14.9
Number of peaks
13166 (qval < 1E-05)

mm9

Number of total reads
6939853
Reads aligned (%)
80.7
Duplicates removed (%)
15.3
Number of peaks
13202 (qval < 1E-05)

Base call quality data from DBCLS SRA