SRX146528
GSM928454: MEF dox Utx; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm6a

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse V19-OSKM Fibroblast
chip antibody
UTX Ab-UTX 5/1, PID 17178841
strain
V19-OSKM
doxycycline induction
DOX
genotype/variation
WT Utx+/Y

Sequenced DNA Library

library_name
GSM928454: MEF_dox_Utx
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13602451
Reads aligned (%)
87.8
Duplicates removed (%)
15.9
Number of peaks
351 (qval < 1E-05)

mm9

Number of total reads
13602451
Reads aligned (%)
87.5
Duplicates removed (%)
16.0
Number of peaks
366 (qval < 1E-05)

Base call quality data from DBCLS SRA