SRX145844
GSM927072: RWPE1-ERG ChIP-seq (Input); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
RWPE1-ERG prostate epithelial cell line, input
cell line
RWPE1
cell type
benign prostate epithelial cells
overexpressing
truncated ERG
passages
20
chip antibody
none

Sequenced DNA Library

library_name
GSM927072: RWPE1-ERG ChIP-seq (Input)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42240098
Reads aligned (%)
96.4
Duplicates removed (%)
9.3
Number of peaks
1083 (qval < 1E-05)

hg19

Number of total reads
42240098
Reads aligned (%)
95.6
Duplicates removed (%)
10.3
Number of peaks
1328 (qval < 1E-05)

Base call quality data from DBCLS SRA