SRX1458094
GSM1960236: SNU719.input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
SNU-719
Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
SNU719-input
cell line
SNU719
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
A protocol generated at Myer`s laboratory (http://hudsonalpha.org/myers-lab/protocols) libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25877419
Reads aligned (%)
96.3
Duplicates removed (%)
42.0
Number of peaks
654 (qval < 1E-05)

hg19

Number of total reads
25877419
Reads aligned (%)
95.2
Duplicates removed (%)
43.6
Number of peaks
701 (qval < 1E-05)

Base call quality data from DBCLS SRA