Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Pluripotent stem cell

Cell type

ES cells

NA

NA

Sample

source_name

H1 TKO embryonic stem cells, H3K4me3 ChIP

strain/background

C57BL/6

cell type

embryonic stem cell line

genotype/variation

H1c, H1d, H1e triple-null

chip antibody

H3K4me3 (Abcam ab8580, lot# GR111321-2)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

TruSeq DNA sample preparation kit (Illumina).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

20223225

Reads aligned (%)

39.7

Duplicates removed (%)

8.6

Number of peaks

16189 (qval < 1E-05)

mm9

Number of total reads

20223225

Reads aligned (%)

39.6

Duplicates removed (%)

8.7

Number of peaks

16080 (qval < 1E-05)