SRX1452768
GSM1954936: H1 TKO ESC DNaseI R3; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
H1 TKO embryonic stem cells, DNaseI
strain/background
C57BL/6
cell type
embryonic stem cell line
genotype/variation
H1c, H1d, H1e triple-null

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
TruSeq DNA sample preparation kit (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30707114
Reads aligned (%)
99.6
Duplicates removed (%)
16.3
Number of peaks
55253 (qval < 1E-05)

mm9

Number of total reads
30707114
Reads aligned (%)
99.6
Duplicates removed (%)
16.3
Number of peaks
55270 (qval < 1E-05)

Base call quality data from DBCLS SRA