Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata2

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
G1E
cell organism
mouse
cell description
Gata1- erythroid progenitor
cell sex
M
antibody
GATA2_(SC-9008)
antibody antibodydescription
Rabbit polyclonal antibody raised against amino acids 120-235 of GATA-2 of human origin. Antibody Target: GATA2
antibody targetdescription
The GATA family of transcription factors share a conserved zinc finger DNA-binding domain and are capable of binding the WGATAR consensus sequence. GATA1 is erythroid-specific and is essential for normal erythropeisis. By comparison, GATA2 is expressed at high levels in hematopoeitic progenitors, including early erythroid cells, but is strong repressed during erythroblast differentiaion.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-9008
age
E0
age description
Embryonic day 0 (stem cell)
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM001916
replicate
1
strain
129
strain description
Strain 129, has widely available embryonic stem cells

Sequenced DNA Library

library_name
GSM923587: PSU_ChipSeq_G1E_GATA2_(SC-9008)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
31265897
Reads aligned (%)
93.6
Duplicates removed (%)
6.6
Number of peaks
1022 (qval < 1E-05)

mm9

Number of total reads
31265897
Reads aligned (%)
93.5
Duplicates removed (%)
6.7
Number of peaks
1100 (qval < 1E-05)

Base call quality data from DBCLS SRA