Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata1

Cell type

Cell type Class
Embryo
Cell type
Embryonic erythroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
Erythrobl
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Erythrobl
cell organism
mouse
cell description
Erythroblast, ter119+ cells from liver
cell sex
B
antibody
GATA1_(SC-265)
antibody antibodydescription
rat monoclonal antibody raised against mouse recombinant GATA1; recommended for detection of GATA1 of mouse, rat and human origin. Antibody Target: GATA1
antibody targetdescription
GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-265
age
E14.5
age description
Embryonic day 14.5
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM002350
replicate
1
strain
CD-1
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

Sequenced DNA Library

library_name
GSM923575: PSU_ChipSeq_Erythrobl_GATA1_(SC-265)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
129649383
Reads aligned (%)
88.9
Duplicates removed (%)
7.9
Number of peaks
6163 (qval < 1E-05)

mm9

Number of total reads
129649383
Reads aligned (%)
88.8
Duplicates removed (%)
7.9
Number of peaks
6289 (qval < 1E-05)

Base call quality data from DBCLS SRA