SRX144717
GSM922789: input DNA (low-density fractions); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervical cancer cell line
cell line
HeLa S3
chip antibody
none

Sequenced DNA Library

library_name
GSM922789: input DNA (low-density fractions)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13614259
Reads aligned (%)
90.8
Duplicates removed (%)
6.6
Number of peaks
166 (qval < 1E-05)

hg19

Number of total reads
13614259
Reads aligned (%)
90.2
Duplicates removed (%)
7.6
Number of peaks
476 (qval < 1E-05)

Base call quality data from DBCLS SRA