Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNB1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Flag-NLS-M.CviPI-Lamin-B1 K562 clonal cells, EZH2i (GSK343) 72 hours, Doxycycline 24 hours
cell type
chronic myeloid leukemia

Sequenced DNA Library

library_name
GSM5953674
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1% formaldehyde, washed, snap frozen, and stored at -80ºC. Sonication of crosslinked cells was calibrated such that DNA was sheared to between 300bp and 2000bp. Drosophila S2 chromatin (Active Motif) and spike-in antibody (Active Motif) were added following lysis and sonication but prior to immunoprecipitation. ChIP DNA was used to generate sequencing libraries by end repair (End-It DNA repair kit, Epicentre), 3' A base overhang addition via Klenow fragment (NEB), and ligation of barcoded sequencing adapters. Quantitative spike-in ChIP-Seq

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
28431305
Reads aligned (%)
97.9
Duplicates removed (%)
14.9
Number of peaks
573 (qval < 1E-05)

hg19

Number of total reads
28431305
Reads aligned (%)
97.0
Duplicates removed (%)
15.3
Number of peaks
353 (qval < 1E-05)

Base call quality data from DBCLS SRA