SRX144065
GSM920950: input ChIP-Seq 3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Raji-cells
cell line
Raji-cells
genotype/variation
Th4/Ala mutant
cell type
Burkitt's lymphoma
ChIP
Chromatin IP against sonicated genomic DNA

Sequenced DNA Library

library_name
GSM920950: input_ChIP-Seq_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41780561
Reads aligned (%)
87.1
Duplicates removed (%)
41.2
Number of peaks
782 (qval < 1E-05)

hg19

Number of total reads
41780561
Reads aligned (%)
86.3
Duplicates removed (%)
42.6
Number of peaks
1157 (qval < 1E-05)

Base call quality data from DBCLS SRA