Antigen

Antigen Class

TFs and others

Antigen

Ctcf

Cell type

Cell type Class

Blood

Cell type

Bone Marrow Cells

MeSH Description

Cells contained in the bone marrow including fat cells (see ADIPOCYTES); STROMAL CELLS; MEGAKARYOCYTES; and the immediate precursors of most blood cells.

Sample

source_name

BoneMarrow

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

BoneMarrow

cell organism

mouse

cell description

Bone Marrow

cell sex

M

antibody

CTCF

antibody antibodydescription

rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEM001447

labversion

11/19/09 Lane 1, 12/14/09 Lane 1

replicate

1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM918757: LICR_ChipSeq_BoneMarrow_CTCF_adult-8wks

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

56248480

Reads aligned (%)

79.1

Duplicates removed (%)

19.1

Number of peaks

27956 (qval < 1E-05)

mm9

Number of total reads

56248480

Reads aligned (%)

78.9

Duplicates removed (%)

19.0

Number of peaks

28050 (qval < 1E-05)