SRX143827
GSM918735: LICR ChipSeq OlfactBulb Pol2 adult-8wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Others
Cell type
Olfactory epithelium
NA
NA

Attributes by original data submitter

Sample

source_name
OlfactBulb
biomaterial_provider
LICR lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
OlfactBulb
cell organism
mouse
cell description
Olfactory Bulb
cell sex
M
antibody
Pol2
antibody antibodydescription
mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002473
labversion
3/14/11 Lane 5
replicate
1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918735: LICR_ChipSeq_OlfactBulb_Pol2_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35930621
Reads aligned (%)
85.9
Duplicates removed (%)
32.8
Number of peaks
12838 (qval < 1E-05)

mm9

Number of total reads
35930621
Reads aligned (%)
85.8
Duplicates removed (%)
32.9
Number of peaks
12913 (qval < 1E-05)

Base call quality data from DBCLS SRA