Antigen

Antigen Class

TFs and others

Antigen

Ctcf

Cell type

Cell type Class

Kidney

Cell type

Kidney

MeSH Description

Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Sample

source_name

Kidney

biomaterial_provider

Stam lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

Kidney

cell organism

mouse

cell description

Kidney

cell sex

M

antibody

CTCF

antibody antibodydescription

rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEM001451

labversion

05/04/09 Lane 6

replicate

1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM918731: LICR_ChipSeq_Kidney_CTCF_adult-8wks

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

38163846

Reads aligned (%)

69.2

Duplicates removed (%)

25.3

Number of peaks

47783 (qval < 1E-05)

mm9

Number of total reads

38163846

Reads aligned (%)

69.1

Duplicates removed (%)

25.3

Number of peaks

47768 (qval < 1E-05)