SRX143800
GSM918708: LICR ChipSeq Limb Pol2 E14.5

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Limb
biomaterial_provider
1)LICR lab 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Limb
cell organism
mouse
cell description
Limb
cell sex
U
antibody
Pol2
antibody antibodydescription
mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
age
E14.5
age description
Embryonic day 14.5
age
E14.5
age description
Embryonic day 14.5
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002482
labversion
11/30/10 Lane 1
replicate
1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918708: LICR_ChipSeq_Limb_Pol2_E14.5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28614086
Reads aligned (%)
61.4
Duplicates removed (%)
23.8
Number of peaks
14111 (qval < 1E-05)

mm9

Number of total reads
28614086
Reads aligned (%)
61.3
Duplicates removed (%)
24.0
Number of peaks
14144 (qval < 1E-05)

Base call quality data from DBCLS SRA