SRX1434642
GSM1941837: Interphase ctl2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
EKOiE
strain
129/Ola
cell-cycle phase
asynchronous
treatment
48h DOX withdrawal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Diagenode MicroPlex kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
60578539
Reads aligned (%)
96.3
Duplicates removed (%)
18.7
Number of peaks
559 (qval < 1E-05)

mm9

Number of total reads
60578539
Reads aligned (%)
96.1
Duplicates removed (%)
18.6
Number of peaks
640 (qval < 1E-05)

Base call quality data from DBCLS SRA