SRX1434641
GSM1941836: Interphase ctl1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
EKOiE
strain
129/Ola
cell-cycle phase
asynchronous
treatment
48h DOX withdrawal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Diagenode MicroPlex kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40982134
Reads aligned (%)
96.2
Duplicates removed (%)
16.9
Number of peaks
308 (qval < 1E-05)

mm9

Number of total reads
40982134
Reads aligned (%)
96.0
Duplicates removed (%)
16.8
Number of peaks
334 (qval < 1E-05)

Base call quality data from DBCLS SRA