SRX1434640
GSM1941835: Interphase rep4; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
EKOiE
strain
129/Ola
cell-cycle phase
asynchronous
treatment
DOX

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Diagenode MicroPlex kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28201667
Reads aligned (%)
92.4
Duplicates removed (%)
48.8
Number of peaks
25400 (qval < 1E-05)

mm9

Number of total reads
28201667
Reads aligned (%)
91.8
Duplicates removed (%)
48.8
Number of peaks
25429 (qval < 1E-05)

Base call quality data from DBCLS SRA