SRX143299
GSM917814: SNAPC1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC1

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A
cell line
non-tumorigenic epithelial cell line MCF 10A
chip antibody
anti-SNAPC1 rabbit polyclonal (SIGMA, S4950)

Sequenced DNA Library

library_name
GSM917814: SNAPC1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16778987
Reads aligned (%)
96.4
Duplicates removed (%)
22.8
Number of peaks
1205 (qval < 1E-05)

hg19

Number of total reads
16778987
Reads aligned (%)
95.5
Duplicates removed (%)
24.5
Number of peaks
1184 (qval < 1E-05)

Base call quality data from DBCLS SRA