SRX143290
GSM917528: H3K4Me3 KO CT18 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mll3∆/∆ MEF
strain
C57BL/6
tissue
Mll3∆/∆ MEF
chip antibody
H3K4Me3
antibody vendor
Abcam
time point
CT18

Sequenced DNA Library

library_name
GSM917528: H3K4Me3_KO_CT18_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7951861
Reads aligned (%)
92.1
Duplicates removed (%)
66.8
Number of peaks
69 (qval < 1E-05)

mm9

Number of total reads
7951861
Reads aligned (%)
92.0
Duplicates removed (%)
66.9
Number of peaks
52 (qval < 1E-05)

Base call quality data from DBCLS SRA