Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mouse MEFs, OSKM day 10
day
10
transfection
OSKM lentiviral transfection
overexpression
Jmjd3
knockout
Jmjd3-/-
presumed cell type
Intermediate pluripotent reprogrammed cells
strain
C57Bl6J

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
22588512
Reads aligned (%)
87.2
Duplicates removed (%)
11.2
Number of peaks
597 (qval < 1E-05)

mm9

Number of total reads
22588512
Reads aligned (%)
87.0
Duplicates removed (%)
11.3
Number of peaks
587 (qval < 1E-05)

Base call quality data from DBCLS SRA