SRX143125
GSM916980: HAEC H3K4Me3 TSA3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HAEC_H3K4Me3_500nM TSA_12h
cell line
HAEC
cell type
Primary Human Aortic Endothelial Cells
passages
Passage 4-6
chip antibody vendor
Activ Motif

Sequenced DNA Library

library_name
GSM916980: HAEC H3K4Me3 TSA3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20063900
Reads aligned (%)
98.5
Duplicates removed (%)
4.9
Number of peaks
4526 (qval < 1E-05)

hg19

Number of total reads
20063900
Reads aligned (%)
97.4
Duplicates removed (%)
6.6
Number of peaks
4393 (qval < 1E-05)

Base call quality data from DBCLS SRA