SRX142964
GSM916110: Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
Long-term estrogen deprived breast cancer cell line
cell line
MCF7-LTED
antibody
none

Sequenced DNA Library

library_name
GSM916110: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57942393
Reads aligned (%)
65.6
Duplicates removed (%)
59.5
Number of peaks
1777 (qval < 1E-05)

hg19

Number of total reads
57942393
Reads aligned (%)
65.3
Duplicates removed (%)
60.0
Number of peaks
1734 (qval < 1E-05)

Base call quality data from DBCLS SRA