SRX142962
GSM916108: H3K4me2 LTED

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Breast
Cell type
MCF-7-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
Long-term estrogen deprived breast cancer cell line
cell line
MCF7-LTED
antibody
H3K4me2
vendor
Millipore
treatment
Untreated

Sequenced DNA Library

library_name
GSM916108: H3K4me2_LTED
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2292775
Reads aligned (%)
97.3
Duplicates removed (%)
20.2
Number of peaks
5710 (qval < 1E-05)

hg19

Number of total reads
2292775
Reads aligned (%)
97.1
Duplicates removed (%)
20.5
Number of peaks
5708 (qval < 1E-05)

Base call quality data from DBCLS SRA