SRX142911
GSM916552: IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
trophoblast stem cells
cell type
Blastocyst derived trophoblast stem cells
chip antibody
Purified IgG1 k isotype control (BD Biosciences, Cat. No. 554121, Lot #70274)
genotype
wild type

Sequenced DNA Library

library_name
GSM916552: IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
60183420
Reads aligned (%)
96.9
Duplicates removed (%)
31.0
Number of peaks
709 (qval < 1E-05)

mm9

Number of total reads
60183420
Reads aligned (%)
96.7
Duplicates removed (%)
30.9
Number of peaks
825 (qval < 1E-05)

Base call quality data from DBCLS SRA