Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line
LNCaP
genotype/variation
FoxA1 knockdown
chip antibody
anti-FoxA1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM916524: LNCaP_shFoxA1_regular_medium_FoxA1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
30215487
Reads aligned (%)
30.6
Duplicates removed (%)
60.9
Number of peaks
30957 (qval < 1E-05)

hg38

Number of total reads
30215487
Reads aligned (%)
31.8
Duplicates removed (%)
59.7
Number of peaks
30956 (qval < 1E-05)

Base call quality data from DBCLS SRA