SRX14284267
ARID1A ChIP-Seq using Abcam Ab of HMEC-hTert breast epithelial cells treated with Bex-Carv

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
University of Debrecen, Oncological Translational Research Laboratory (OTREL), Uray Iván
sex
not applicable
tissue
mammary gland, breast
cell_line
HMEC-hTert
cell_type
epithelial cells
treatment
Bexarotene 100nM+ Carvedilol 1000nM
antibody
ARID1A (Abcam, ab182560, Lot # GR3240244-2, 8µg)

Sequenced DNA Library

library_name
hs_HMEC-hTert_Bex-Carv_ARID1A_Abcam_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28108257
Reads aligned (%)
97.2
Duplicates removed (%)
6.1
Number of peaks
788 (qval < 1E-05)

hg19

Number of total reads
28108257
Reads aligned (%)
96.5
Duplicates removed (%)
7.2
Number of peaks
749 (qval < 1E-05)

Base call quality data from DBCLS SRA