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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: hESC derived neural cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX142754
ChIP-Seq analysis of H2A.Z in human hN r1 cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
DONOR_HEALTH_STATUS
NA
MOLECULE
genomic DNA
DISEASE
none
MARKERS
>90% beta III tubulin(+) and >60% MAP2(+)
CULTURE_CONDITIONS
Medium: Differentiated from hNP1(trademark) for 2 weeks under defined (feeder & serum free) conditions - AB2+ANS+LIF on Matrigel (i.e., differentiation medium)
PASSAGE_IF_EXPANDED
NA
CELL_TYPE
hN (ES H9 derived Neurons)
DONOR_ETHNICITY
NA
DONOR_SEX
female
BIOMATERIAL_TYPE
Primary Cell Culture
DONOR_ID
113
BIOMATERIAL_PROVIDER
ArunA Biomedical, Athens, GA
DONOR_AGE
embryo
sample_term_id
CL_0000540
Sequenced DNA Library
library_name
DNA_Lib 294
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
32326517
Reads aligned (%)
97.9
Duplicates removed (%)
27.7
Number of peaks
17353 (qval < 1E-05)
hg19
Number of total reads
32326517
Reads aligned (%)
97.3
Duplicates removed (%)
29.1
Number of peaks
17358 (qval < 1E-05)
Base call quality data from
DBCLS SRA