Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Yeast strain
Cell type
249
NA
NA

Attributes by original data submitter

Sample

source_name
S. cerevisiae
strain
249
genotype
MATa his3delta1 leu2delta met15delta ura3delta gcn4delta::kanMX4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
In ChIP-seq experiments, cells were cross-linked with formaldehyde before harvesting. In MNase-seq experiments, nuclei were prepared from unfixed yeast cells and then digested with MNase. Mono-nucleosomal DNA was gel-purified (~150 bp). See paper for details. The DNA was repaired using the DNA repair kit from New England Biolabs. The repaired DNA was processed for paired-end sequencing according to the Illumina protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

sacCer3

Number of total reads
12149580
Reads aligned (%)
74.4
Duplicates removed (%)
77.0
Number of peaks
694 (qval < 1E-05)

Base call quality data from DBCLS SRA