Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TEAD1

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
DU145 Prostate Cancer Cells
primary site
Prostate
chip antibody
TEAD1 (BD Biosciences #610922)

Sequenced DNA Library

library_name
GSM5899862
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was isolated from log phase growing cells, followed by FOSL1 , YAP, TAZ , and TEAD1 ChIP using antibodies. ChIP-Seq libraries were prepared using the KAPA HTP Library Prep kit at the Integrative Genomics Operation (IGO) at MSKCC.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
53576474
Reads aligned (%)
96.9
Duplicates removed (%)
10.6
Number of peaks
4838 (qval < 1E-05)

hg19

Number of total reads
53576474
Reads aligned (%)
95.9
Duplicates removed (%)
10.8
Number of peaks
4337 (qval < 1E-05)

Base call quality data from DBCLS SRA