Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TEAD1

Cell type

Cell type Class
Prostate
Cell type
MSK-PCa3
NA
NA

Attributes by original data submitter

Sample

source_name
MSK-PCa3 Prostate Cancer Organoid Line
primary site
Prostate
chip antibody
TEAD1 (BD Biosciences #610922)

Sequenced DNA Library

library_name
GSM5899857
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was isolated from log phase growing cells, followed by FOSL1 , YAP, TAZ , and TEAD1 ChIP using antibodies. ChIP-Seq libraries were prepared using the KAPA HTP Library Prep kit at the Integrative Genomics Operation (IGO) at MSKCC.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
67012473
Reads aligned (%)
97.4
Duplicates removed (%)
15.1
Number of peaks
10523 (qval < 1E-05)

hg19

Number of total reads
67012473
Reads aligned (%)
96.5
Duplicates removed (%)
15.3
Number of peaks
9938 (qval < 1E-05)

Base call quality data from DBCLS SRA