SRX1410758
GSM1924547: CDK4i-treated input rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Others
Cell type
DDLS8817
NA
NA

Attributes by original data submitter

Sample

source_name
Dedifferentiated liposarcoma cells
cell line
LS8817
drug treatment
CDK4 inhibitor PD0332991

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with ATRX antibody using magnetic beads.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
58781492
Reads aligned (%)
97.6
Duplicates removed (%)
5.4
Number of peaks
949 (qval < 1E-05)

hg19

Number of total reads
58781492
Reads aligned (%)
97.0
Duplicates removed (%)
6.1
Number of peaks
928 (qval < 1E-05)

Base call quality data from DBCLS SRA