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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Embryonic hippocampus
ATCC
MeSH
RIKEN BRC
SRX1409869
ChIP-seq of Mus musculus: WT neuron ChIP H3K27me3 rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Neural
Cell type
Embryonic hippocampus
NA
NA
Attributes by original data submitter
Sample
strain
129Sv/Ev
age
E16.5
dev_stage
E16.5
sex
pooled male and female
tissue
hippocampus
phenotype
WT rep1
treatment
ChIP
Sequenced DNA Library
library_name
WT1-H3K27me3_PE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
14333130
Reads aligned (%)
97.4
Duplicates removed (%)
18.5
Number of peaks
141 (qval < 1E-05)
mm9
Number of total reads
14333130
Reads aligned (%)
97.2
Duplicates removed (%)
18.9
Number of peaks
121 (qval < 1E-05)
Base call quality data from
DBCLS SRA