SRX139882
GSM912551: mouse e11.5 neural-tube smarca4-flag; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Embryo
Cell type
Neural tube
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse embryonic day 11.5 (e11.5) neural tube, FLAG-ChIP
strain
129/C57BL/6
genotype/variation
SMARCA4/FLAG knock-in
Sex
pooled male and female
age
embryonic day 11.5 (e11.5)
tissue
tube
chip antibody
anti-FLAG [Sigma- F1804 [ 1mg/ml ]-Monoclonal ANTI-FLAG M2 antibody produced in mouse. Lot #: 088K6018]

Sequenced DNA Library

library_name
GSM912551: mouse_e11.5_neural-tube_smarca4-flag
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
63785609
Reads aligned (%)
57.6
Duplicates removed (%)
26.6
Number of peaks
50673 (qval < 1E-05)

mm9

Number of total reads
63785609
Reads aligned (%)
57.3
Duplicates removed (%)
26.4
Number of peaks
50863 (qval < 1E-05)

Base call quality data from DBCLS SRA